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If you have no mysql backup you have no options.
This is exactly the reason why the upgrade instructions state to take a mysql backup. Upgrade 485 changes filenames and that upgrade from the errors your providing was not ran or ran twice which resulting in filenames not being as they should and then you ran a scan database which is a powerful tool. If a photo can not be found then the insert is removed from the database which is where you are at now.
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