I know I've made a lot of modifications. I've talked about them elsewhere. But, I'm careful about what I ask for support on.
I'm not sure how you came to the conclusion that that record is missing in the table. That's from the install, right? When I look at that file, the record is there exactly as it's supposed to be in the cp_settings table. Perhaps you just added it for me? If so, I'm still having the same problem.